کارگاه  آموزشی Next-Generation Sequencing & Data Analysis

 

 مدت دوره: 12 ساعت  8 جلسه
هزینه دوره:
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سرفصل و محتوای دوره:

NGS Technologies
Introduction to sequencing technologies
Common NGS data analysis issues
Applications of sequencing technologies

Introduction to NGS data analysis
Raw sequence files
Preprocessing of raw reads
Read mapping
Mapping output
Variant calling
Variant annotation

Practical Bioinformatics (with Linux)

  1. Hands on Linux
  2. Introduction to Variant Discovery
  3. Pre-Processing
  4. Germline variant discovery
  5. Somatic mutation detection
  6. Sequence data basics
  7. Germline SNP & InDels
  8. Variant Filtering
  9. Somatic SNPs & InDels
   10.Somatic CNVs

Applications of sequencing technologies

Requirements
Basic understanding of molecular biology (DNA, RNA, gene expression, ...)
For the Introduction to NGS Data Analysis and downstream courses: basic linux & bioinformatics knowledge (shell usage, common commands and tools).

 

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